Final exam lecture vocabulary CC-BY-NC

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Some vocabulary from lectures 10-25 (the ones covered on the final). You can access these in flashcard form on StudyBlue at the following link: http://www.studyblue.com/#flashcard/view/6650316. You'll need to register an account first, but it's pretty nice.

1Lecture 10

1.1Embryonic development part one

zygote
diploid, union of haploid gametes
embryo
young organism, contained in protective structure
cleavage
cell division in zygote
gastrulation
infolding of embryonic tissue → layers
morula
solid ball of cells, pre-gastrulation
blastula
hollow ball, cells in exterior; pre-gastrulation
gastrula
after infolding begins
blastopore
invagination → mouth (protosome), anus (deuterostome)
archenteron
digestive space (gut cavity)
ectoderm
outer layer → epidermis, nervous tissue
mesoderm
middle layer → internal organs etc
endoderm
inner layer → lining of respiratory, digestive systems

1.2Cnidarians

blind gut
digestive (gastrovascular) cavity - one opening
mesoglea
gel, not tissue, structural support in cnidarians
polyp
sessile form of cnidarians, mouth upward
medusa
motile, mouth downward
cnidocytes
cells that produce nematocysts, unique to cnidarians
nematocysts
organelle, coiled tube → prey, releases venom
nerve net
in epidermis and gastrodermis, connected by mesoglea; connected neurons, no brain
planula
free-swimming, bilateral, ciliated larvae
Hydrozoa (class)
polyp dominant - e.g. Hydra
Scyphozoa (class)
jellyfish, medusa dominant, no velum
Anthozoa (class)
corals, anemones etc; polyp - no medusa
velum
shelf under edge of bell, muscular; jellyfish lack this
coral bleaching
zooxanthelle expelled, corals may die

1.3Platyhelminthes

platyhelminthes
flatworms, flat like a plat(e)
planarian
specific family; cephalisation, mouth in middle of ventral side
cephalisation
concentration of neurons, senses at anterior
Turbellaria (class)
free-living (the only class)
Monogenea (class)
flukes, parasites on fish gills
Trematoda (class)
flukes, incl. Schistosoma
Cestoda (class)
tapeworms, in vertebrate intestines
fluke
flat body with suckers (body plan)
schistosomiasis
human, snail host; unsanitary water
scolex
head of tapeworm, has suckers and hooks
proglottids
tapeworm hermaphroditic reproductive structures
endo/ectoparasites
inside/outside host body (e.g. on skin)

2Lecture 11

2.1Embryonic development part two

complete gut
mouth & anus → continuous processing of food, specialisation
crop
store food in certain animals
gizzard
grind food, muscular
rumen
first chamber in herbivore stomach, stores bacteria to break down cellulose
extracellular matrix
assists in mesoderm movement (embyro)
lophotrocozoans
type of protostome, has either lophophore or trocophore or both
lophophore
ciliated feeding/gas exchange structures
trocophore
ciliated free-living larval form
ecdysozoan
type of protostome; must shed external covering periodically
acoelomate
solid (except for the digestive cavity); e.g. flatworms (platyhelminthes)
pseudocoelom
mesoderm lines only the outside of cavity, e.g. roundworms (nematodes)
mesenchyme
unspecialised cells, from germ layers → tissue
coelom
mesoderm lines organs etc too → peritoneum
diploblasts
have only ectoderm and endoderm, no coloem
triploblasts
3 germ layers (ecto, endo, mesoderm), may have a coelom
schizocoely
in protostomes, mesoderm just splits in the middle → coelom
enterocoely
in deuterostomes, mesoderm lines out-pockets of gut → coelom

2.2Nematodes

nematodes
roundworms, pseudocoelom, ecysozoan
C. elegans
model organism, species of nematode, used in research
hookworm
type of roundworm, spread through feces → intestine

2.3Annelids

annelida
segmented worms, lophotrocozoans
segmentation
evolutionary advance, multiple copies of structures, specialisation
septa
walls separating segments
serial homology
specialisation of similar, repetitive structures
circular and longitudinal muscles
contraction → compression → elongation → movement
Polychaeta (class)
many hairs, marine worms, trocophore larvae, must stay moist
Clitellata (class)
has clitellum, subclasses below
Oligochaeta (subclass)
few hairs, terrestrial, detritivores, aerate soil
Hirudinea (subclass)
leeches, no setae
clitellum
reproductive structure, secretes mucus → cocoon for embryo

3Lecture 12

3.1Mollusks

aposematic
warning coloration, to warn off predators (might indicate toxicity)
Mollusca
snails shellfish squid etc, bilateral triploblasts, trocophore larvae (if marine)
mantle
layer covering viscera, secretes CaCO3 shell
mantle cavity
gills OR lots of blood vessels for terrestrials ("lungs")
radula
located after mouth → tearing and scraping
shell
secreted by mantle, gastropods (nudibranchs) and cephalopods can lack
Polyplacophora (class)
many dorsal plates, ventral gills
Bivalvia (class)
shellfish, hinged shell, siphons, small head, large foot → digging
adductor muscles
clam use → clamp shell shut
incurrent/excurrent
water flows in/out (ref. to siphons usually)
Gastropoda (class)
snails etc, most diverse, 2 tentacle pairs, undergo torsion
torsion
visceral mass rotates 180° (due to different growth rates), separate evolutionary event from coiling
operculum
for snails, → seal off head; else, gill covering
love dart
snails, special mucus → improve fertilisation
cerrata
additional breathing apparatus; nudibranchs can use to store cnidarians' nematocysts
Cephalopoda (class)
squids etc, few tentacles (arms), reduced/no shell
chromatophores
pigmented cells on surface of cephalopods and others → colour change, from neural crest
hemocoel
organs bathed in blood
mantle & siphon
jet propulsion in cephalopods

3.2The nervous system

ganglia
concentration of nerve cells
afferent/efferent
going TO/going AWAY FROM
neurons
generate/transmit electrical signals (nerve impulses)
glial cells
support neurons (nutrients, insulate, maintain extracellular environment)
Schwann cells
type of glial cell, insulate axon
axon
branch part of neuron, synapse with neurons/receptors
dendrites
small twig-like part of neuron, interact with other neurons
axon hillock
the centre, integrates signals, initiates action potential
nerve impulse
action potential, quick voltage change across membrane
temporal summation
one neuron stimulated a lot
node of Ranvier
between myelin sections, nerve impulses jump this
myelin
outgrowth of glial cells, wrap around axons

4Lecture 13

4.1Arthropods part one

Arthropoda
jointed foot, crustaceans insects etc, most diverse
reduced segmentation
some fused, only head, abdomen, thorax (perhaps cephalothorax)
trilobytes
first arthropods, extinct, fossils
antennae
sensory, on head
maxillipeds
hold food, on head
pereiopods
walking, getting food
pleopods
swimming (abdomen)
rigid exoskeleton
chitin, proteins (CaCO3 - marines), molts
skeletal muscles
need resistor to act on; often antagonistically paired

4.2Muscles

saltatory conduction
in vertebrates, action potentials from one node of Ranvier to the next
electrical synapse
mechanical, shorter distance, no neurotransmitters, for reflexes and other quick, simple behaviours
chemical synapse
larger distance, neurotransmitters needed, more common in vertebrates
neurotransmitter
produced by neuron before synaptic cleft; traverse, bind to receptors
sarcomere
contractile unit of muscle cell
actin filament
thin, monomers + tropomyosin + troponin (proteins)
myosin filament
thick (proteins)
contraction
filaments slide past each other (no length change)
fast-twitch fibers
can reach max tension quickly but can't sustain, fatigue quickly
slow-twitch fibers
red muscles, cont. myoglobin, darker, for endurance
myoglobin
binds to O2 in muscles
skeletal muscles
striated, multinucleated, cylindrical
cardiac muscle
single nucleus (usually), striated, pacemaker cells
smooth muscle
NOT striated (actin & myosin irregularly arranged), involuntary
pacemaker cells
create action potentials independently → heartbeats

5Lecture 14

5.1Arthropods part two

hormone
chemical messenger substance in endocrine system, in blood
Myriapoda (subphylum)
countless feet, centipedes millipedes
centipedes/millipedes
1 pair / 2 pairs of appendages per segment
Chelicera (subphylum)
fangs, incl. arachnids, no jaws
pedipalps
copulatory organs, pincers in scorpions (for chelicerates)
Crustaceans (subphylum)
shrimps Daphnia crabs barnacles etc, compose zooplankton
plankton
cannot outswim currents (zoo = heterotrophic, phyto = autotrophic)
Hexapoda (subphylum)
insects etc, 3 body parts
book lungs/gills
thin, like pages, in arachnids, internal/external
spermatophores
waterproof sperm packets, males pick up and transfer to female
ephippia
thick shell to protect eggs
diapause
delay in development due to environment

5.2Metamorphosis

instar
insect stage between molts
complete metamorphosis
huge change, e.g. caterpillar → butterfly
incomplete/gradual metamorphosis
no resting stage, e.g. nymph → adult
paracrines
act on neighbouring cells (quasi-hormones?), not in blood usually
autocrines
act on self
PTTH
neurohormone → prothoraric gland → produces ecdysone
ecdysone
secreted into the blood, targets epidermis → molting, stops production of PTTH
juvenile hormone
determines the instar stage; quantity decreases over time; cessation → pupation
pupation
→ pupa, eventually adult; no juvenile hormone
anti-diuretic hormone
hypothalamus → pituitary → conserve water
oxytocin
contract uterus, release milk from mammary glands
tropic hormones
act on other endocrine glands
insulin
binds to receptors → increase blood glucose uptake
diabetes I
juvenile, not enough insulin produced → insulin shots
diabetes II
target cells unresponsive to insulin, associated with obesity, diet & exercise
calcitonin
hormone when calcium blood concentration too high; increases calcium uptake, osteoblasts
PTH
hormone when calcium blood concentration too low; retains calcium in kidney, osteoclasts, converts vitamin D → calcitriol
osteoclasts/blasts
breakdown/building of bone
calcitriol
hormonally active form of vitamin D → digestive system absorbs more calcium

6Lecture 15

6.1Echinoderms

Echinodermata
marine, benthic, pentaradial, secrete test
water vascular system
for gas exchange, moving feet etc
madreporite
pores to enter water vascular system, aboral
ampoules
off radial canals in arms
podia
tube feet, locomotion/feeding/respiration/sensory
Crinoidea (class)
sea lilies, feather stars
Ophiuroidea (class)
brittle/basket stars ... fractals
Echinoidea (class)
sea urchins, sand dollars, have pedicellariae
Hoiothuroidea (class)
sea cucumbers, extended body
Asteroidea (class)
starfish, predatory, mobile
pedicellariae
pincers, defense and cleaning
extended body
between radial and bilateral, respire through anus
commensal
one benefits, one unaffected

6.2Chordates

chordates
notochord, dorsal hollow nerve cord, post-anal tail
notochord
rigid, flexible, rod of cells, vacuoles filled with water, found in chordate embryos
pharyngeal gill slits
in ancestors and embryo (at least) for chordates
neurulation
embyronic formation of nervous system
neural tube
from thickening of ectoderm → brain in anterior end
myomeres
segmented muscles
Cephalochordates (subphylum)
lancelets, little fish-like things
Urochordates
tunicates, big sessile adult - basket, vertebrate sister group

7Lecture 16

7.1Features unique to chordates

pouches
embryonic gill slits (pharyngeal) in humans → middle ear
post-anal tail
resorbed in humans, vertebrates fuse → coccyx
gill arches
bars between gill slits, bone/cartilage
gill rakers
trap particles, prevent consumption
arteries → arterioles
away from heart → capillaries
venules → veins
back to heart
ventricle & auricle
two chambers of heart in fish
sinous venous
veins → heart
bulbus conus arteriosis
→ arteries → body

7.2Fish

axial skeleton
skull, rib cage, vertebral column
appendicular skeleton
pectoral/pelvic girdles, fore/hind limbs (optional)
Agnatha (superclass)
jawless fish, lamprey/hagfish
Placoderms
early jawed fish, extinct
Hagfish
no vertebral column, retain notochord
Lamprey
complete braincase, cartilaginous vertebrae
Chondrichthyes (class)
cartilaginous fish
sharks, skates, rays
skates
2 lobes on pelvic fins
rays
1 lobe on pelvic fins
paired fins
for propulsion, pelvic/pectoral
lateral undulation
alternate contraction of myomeres → swimming
oviparous
lay eggs
ovoviviparous
embryo in female, but there is yolk sac (resorbed)
viviparous
retain embryo, fed by placenta/secretions
Osteichthyes (superclass)
bony fish, including ray-finned fish
swim bladder
gas-regulated by gland → neutral buoyancy
pheromones
chemicals to signal to conspecifics (same species)
Sarcopterygians (class)
clade that contains coelacanths, lungfish, and all tetrapods
Coelacanths
skeleton of cartilage (bony fish ancestor)
Lungfish
swim bladder vascularised → breathes air (also has gills); tetrapod sister group

8Lecture 17

8.1The rise to land

Ichthyostega
early tetrapod, used nostrils to breathe air
Eusthenopteron
lobe-finned, first humerus, radius
transitional forms
rare in fossil record, few species
Tiktaalik
fishapod, transitional form
3-chambered heart
mixing of blood (no septum in ventricle), present in amphibians

8.2The respiratory system

ATP
produced when glucose + O2 → CO2 + H2O + ATP
tracheae
have cartilaginous rings to prevent collapse, strength
alveoli
microscopic 1-cell thick air sacs, high surface area for gas exchange
emphysema
alveoli destroyed by inflammation (smoking)
asthma
smooth muscles constrict trachea, bronchi
negative pressure breathing
air goes in because cavity expands → pressure goes down
positive pressure breathing
amphibians; force air into lungs, open glottis
glottis
separates mouth and lungs in amphibians
buccal cavity
mouth (amphibians)

8.3Amphibians

Amphibians
first tetrapods, depend on water at some life stage, no scales
neoteny
no true metamorphosis (some amphibians)
paedometamorphosis
e.g. salamanders; larvae → sexual maturity
obligate neoteny
never morphs
facultative neoteny
waits until environmental conditions are right
Salamanders (order)
mostly internal fertilisation
Frogs (order)
includes toads; males = loud courtship calls
Caecilians (order)
lost appendages, look like worms lol
R-strategy
lots of kids, no care (not covered in course just interesting)
K-strategy
few kids, lots of Kare (^)
Marsupial frog
fertilised egg on female's back
Darwin's frog
vocal sac brooder
Gastric brooding frog
female swallows egg, no feeding or HCl production
chytrid
fungal infection, affects amphibians

9Lecture 18

9.1The amniotic egg

birds
evolved from dinosaurs so they are technically reptiles, but classically we separate the two
non-avian reptiles
truly terrestrial, develop/reproduce on land etc
amniotic egg
extra-embyronic membranes, may have shell
therian
eggs non-shelled, mammalian subclass
albumen
egg white, watery; protection, some nutrients
chorion
gas exchange structure, inside albumen, surrounds others
amnion
wraps around embryo, protects (membranous sac)
allantois
near embryo, gas exchange, stores water
yolk sac
near embryo, holds nutrients
uric acid
non-toxic N-based waste product, held in egg

9.2Excretion

excretory system
control volume/concentration/content of extracellular fluids
osmoconformer
extracellular fluids same concentration as environment
osmoregulator
extracellular fluids different concentration than environment
ammonia
NH3 polar, dissolves in water, toxic, often converted → uric acid/urea
urea
less toxic, less water needed for disposal
protonephridia
flame cells, tubules - excretory organ in flatworms
flame cells
cilia flickering like a '''flame'''
metanephridia
in many invertebrates, like kidneys
nephrostome → nephridiopore
disposal of waste, part of the above
malpighian tubes
filamentous, off midgut - insects
kidneys
2 → one is redundant; filter blood → urine
nephron
functional unit of kidneys
Glomerulus
ball of capillaries
Bowman's capsule
tubule structures, water leaks here
Loop of Henle
strong concentration gradient → further concentrate urine
kidney failure
→ salt/water retention → possible poisoning
dialysis
blood passes over membranes in solutions, filters out bad things etc

9.3Reptile diversity

Testudines (order)
turtles (including tortoises = land)
dorsal shell
on turtles; expansion of ribs
Lepidosaurs (superorder)
squamata, tuataras etc
Squamata (order)
lizards, snakes (lost limbs lol)
Tuataras
like lizards, but have a third eye
Archosaurs (group)
crocodilians, dinosaurs and modern birds
Crocodilians (order)
crocodiles, alligators, aimans, gharials
Crocodile/alligator
V-shaped/U-shaped snout (top jaws larger)
Ornithischians
beaked, herbivorous dinosaurs
Sauropods
long-neck dino
Theropods
T-rexes etc → birds

10Lecture 19

10.1Birds

Aves (class)
birds, highly evolved reptiles, bipedal, 3 hind toes
Lesser snow geese
population explosion → overforaging of arctic tundra
Archaeopteryx
"ancient wings", transitional form, first bird, Jurassic
Galapagos finches
beaks → niches, adapted to diet
endotherms
generate heat through inefficiency in energy transformation (metabolic processes)
ectotherms
absorb external heat
heterotherms
characteristics of both, e.g. bears (hiberation), flying insects
insect muscles
must be 34° to fly, so they shiver
counter-current heat exchangers
in pelagic fish, blood → muscles to warm them
hypothalamus
negative feedback → thermoregulation
parabronchi
branch off bronchi → air sacs
tidal respiration
e.g. mammals, not unidirectional; like a tide
feathers
insulation, flight, sensory, line nests; keratin (derived from scales)
convergent evolution
common environment/need, not ancestor (not homologous)
spoiler
maintain laminar flow over wing
alula
feathers on first digit → control
hovering
hummingbirds, rotate shoulder joint 180°
dynamic
oceanic birds, dive into wind, go up
static soaring
jump off cliffs, soar on updrafts (e.g. turkey vultures)
soaring
lift without flapping - updrafts, thermals
ground-up theory
bipedal runner, one day decided to fly (supported by partridge chicks)
tree-down theory
arboreal ancestor → gliding between trees; supported by fossil with feathers on legs

11Lecture 20

11.1Mammals

Mammalia (class)
hair, sweat/mammary glands, 4-chambered heart, 225 mya
skull morphology
number, placement of temporal fenestrae (holes) → muscle attachment
anapsid
only eyehole (turtles)
synapsid
including therapsids, mammals; one extra hole, bottom
euryapsid
extinct marine reptiles; one extra hole, top
diapsid
2 holes, birds and dinosaurs
therapsid
early synapsid, mammalian ancestor, legs beneath body
heterodonty
teeth specialised for different functions
middle ear
3 bones, hammer stirrup anvil, derived from jaw
Ambulocetus
whale ancestor (cetaceans)
Smilodon
sabre-toothed cat, hunted to extinction probably
Megatherium
giant ground sloth, also hunted?

11.2Reproduction

reciprocal hermaphroditism
each fertilises the other
sequential hermaphroditism
change change gender, common in fish
hermaphroditic mammals
e.g. beluga in St. Laurence (both gametes), possibly due to pollutants
pseudohermaphrodite
e.g. spotted hyena, female has enlarged clitoris → pseudopenis
sexual dimorphism
sexes look different ...
rodents
incisors constantly growing; largest group of mammals
Prototherians
mammalian group; includes platypi; shelled eggs
Monotremes (order)
only extant order of Prototherians; platypi, basically
Marsupials
some placental, kangaroos etc; viviparous
Eutherians
placental, viviparous, no pouch/shell; with Marsupials = therians
placenta
extra-embryonic membranes + uterus lining (endometrium), nutrients, maintained by hormones
oviduct
where fertilisation occurs
zona pellucida
glycoprotein membrane, ensures same-species fertilisation
cumulus
surrounds the above, like a cloud ☁ ☁ ☁
acrosomal reaction
head of sperm (acrosome) has enzymes to digest zona
trophoblast
outer layer of blastocyst → part of placenta
chorion
secretes hormones, has villi to attach to uterus
allantois
becomes blood vessels, umbilical arteries
umbilical cord
2 arteries, deoxygenated blood → mother; 1 vein, oxygenated blood → fetus
water breaking
fetus emerging from amniotic sac
hCG
Human chorionic gonadotropin, hormone, presence of it in urine measured by pregnancy tests

12Lecture 21

12.1Primates

Prosimians
in order "primates", arboreal, lemurs etc, large eyes (noctural)
Anthropoids
other primates; tarsiers, monkeys, apes
Tarsiers
tiny primates, completely carnivorous (insects); large tarsus bones (feet)
New World monkeys
Americas, have prehensile tail (grasping)
Old World monkeys
Asia, Africa; no prehensile tail
ape
larger brain/body ratio than monkeys, lack tails (so do some monkeys)
gibbons
lesser apes, smaller, arboreal
Orangutans
larger, walk and climb up trees
African apes
gorillas, chimps, hominids
Homo neanderthalis
coexisted with humans, extinct 30,000 ya
Hominids
arose from ardipithicine ancestors (protohominid)
Lucy
australopithecus afarensis, extinct, bipedal, small brain; a relatively complete skeleton
Homo habilis
first evidence of tool use, shorter jaw ... extinct
Homo erectus
first to leave Africa, use fire ... also extinct
Homo sapiens
200,000 ya, larger brains ... STILL EXTANT you might have met one
Homo floriensis
hobbit, extinct due to volcanic eruption?

12.2The mammalian nervous system

central nervous system
brain + spinal cord (continuous)
peripheral nervous system
lateral nerves + spinal nerves from spinal cord
forebrain
from telecephalon + diencephalon
telencephalon
cerebrum, limbic system
diencephalon
hypothalamus, thalamus
cerebrum
center of intellect etc, 2 hemispheres separated by corpus callosum
cerebral cortex
top layer, rich in cell bodies
limbic system
amygdala, hippocampus, nucleus accuben; basic drives
nucleus accubens
site of dopamine release
amygdala
controls fear; without, you're fearless
hypothalamus
continuous with pituitary, produce neurohormones, released by pituitary
thalamus
relay station between cerebral cortex, others
midbrain
relay, cerebrum → brainstem
brainstem
pons, midbrain (huh?), medulla oblongata
hindbrain
pons, medulla, cerebellum
pons
breathing along with medulla, messages → cerebrum from nerve cords
medulla oblongata
autonomic functions
cerebellum
smaller than cerebrum, outgrowth of pons; coordination etc
spinal cord
reflexes, protected by vertebrae, meninges
meninges
membranes; cushioning, blood supply
reflex
involuntary neuromuscular action, controlled by spine; after, message → brain informing it
sympathetic
stress, fight or flight (norepinephrine)
parasympathetic
rest & digest (acetycholine)

13Lecture 22

13.1Ecosystem ecology

ecosystem
chemical/physical properties + organisms
Anthropocene
current geological era ("after" Holocene)
biome
environment of similar climate, vegetation
eutrophication
too many nutrients → algal bloom → algae die, aerobic bacteria to decompose → O2 down
paleoliminology
study of lake sediments
chronosequence
looking at different sediments with different ages?

14Lecture 23

14.1Introduction to evolution

evolution
changes in inherited traits of a population over generations
mutation
imperfect replication of gene sequence
genetic drift
random change in allele frequency → fixation of one allele
natural selection
best traits for surviving → next generation
artificial selection
choosing a trait, e.g. breeding, crops
sexual selection
intrasexual (male competition) or intersexual (female choice)
gonopodin
male mosquitofish, aids sneaky copulation; but a hindrance, natural selection wise

15Lecture 24

15.1Speciation

gene flow
movement of genes across populations, opposes divergence, through migration/interbreeding
neutral allele
no effect on fitness/phenotype, usually only lost due to genetic drift
morphological
definition of a species, based on appearance
cryptic species
a bunch of species that all look the same, e.g. in frogs
biological
definition of a species, due to reproductive isolation
reproductive isolation
can only breed → fertile offspring with each other
phylogenetic species
branch on tree of life
ring species
Siberian greenish warbler, around mountain; reproductive isolation at ends
allopatric/sympatric
different/same area ("country")
speciation
one species, 2+ groups diverge; gene flow must be interrupted
ecological speciation
adaptation to different niches → divergence
polyploidy
offspring has different number of chromosomes
cytoplasmic incompatibility
Wolbachia bacteria, infects beetles, inf. males only reproduce with inf. females

16Lecture 25

16.1Ecology

ecology
study of interactions between organisms, environment
foraging theory
animals eat to maximise $\frac{\mbox{energy intake}}{\mbox{work done}}$
geophagia
eating dirt, protects against toxins (binds to them)
group selection
group with lots of altruism → more reproductively successful
allee effects
at low population numbers, hard to find mate; growth rate low
trophic cascades
cascading effects in food chain. see: Yellowstone disaster