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Some vocabulary from lectures 10-25 (the ones covered on the final). You can access these in flashcard form on StudyBlue at the following link: http://www.studyblue.com/#flashcard/view/6650316. You'll need to register an account first, but it's pretty nice.
1Lecture 10¶
1.1Embryonic development part one¶
- zygote
- diploid, union of haploid gametes
- embryo
- young organism, contained in protective structure
- cleavage
- cell division in zygote
- gastrulation
- infolding of embryonic tissue → layers
- morula
- solid ball of cells, pre-gastrulation
- blastula
- hollow ball, cells in exterior; pre-gastrulation
- gastrula
- after infolding begins
- blastopore
- invagination → mouth (protosome), anus (deuterostome)
- archenteron
- digestive space (gut cavity)
- ectoderm
- outer layer → epidermis, nervous tissue
- mesoderm
- middle layer → internal organs etc
- endoderm
- inner layer → lining of respiratory, digestive systems
1.2Cnidarians¶
- blind gut
- digestive (gastrovascular) cavity - one opening
- mesoglea
- gel, not tissue, structural support in cnidarians
- polyp
- sessile form of cnidarians, mouth upward
- medusa
- motile, mouth downward
- cnidocytes
- cells that produce nematocysts, unique to cnidarians
- nematocysts
- organelle, coiled tube → prey, releases venom
- nerve net
- in epidermis and gastrodermis, connected by mesoglea; connected neurons, no brain
- planula
- free-swimming, bilateral, ciliated larvae
- Hydrozoa (class)
- polyp dominant - e.g. Hydra
- Scyphozoa (class)
- jellyfish, medusa dominant, no velum
- Anthozoa (class)
- corals, anemones etc; polyp - no medusa
- velum
- shelf under edge of bell, muscular; jellyfish lack this
- coral bleaching
- zooxanthelle expelled, corals may die
1.3Platyhelminthes¶
- platyhelminthes
- flatworms, flat like a plat(e)
- planarian
- specific family; cephalisation, mouth in middle of ventral side
- cephalisation
- concentration of neurons, senses at anterior
- Turbellaria (class)
- free-living (the only class)
- Monogenea (class)
- flukes, parasites on fish gills
- Trematoda (class)
- flukes, incl. Schistosoma
- Cestoda (class)
- tapeworms, in vertebrate intestines
- fluke
- flat body with suckers (body plan)
- schistosomiasis
- human, snail host; unsanitary water
- scolex
- head of tapeworm, has suckers and hooks
- proglottids
- tapeworm hermaphroditic reproductive structures
- endo/ectoparasites
- inside/outside host body (e.g. on skin)
2Lecture 11¶
2.1Embryonic development part two¶
- complete gut
- mouth & anus → continuous processing of food, specialisation
- crop
- store food in certain animals
- gizzard
- grind food, muscular
- rumen
- first chamber in herbivore stomach, stores bacteria to break down cellulose
- extracellular matrix
- assists in mesoderm movement (embyro)
- lophotrocozoans
- type of protostome, has either lophophore or trocophore or both
- lophophore
- ciliated feeding/gas exchange structures
- trocophore
- ciliated free-living larval form
- ecdysozoan
- type of protostome; must shed external covering periodically
- acoelomate
- solid (except for the digestive cavity); e.g. flatworms (platyhelminthes)
- pseudocoelom
- mesoderm lines only the outside of cavity, e.g. roundworms (nematodes)
- mesenchyme
- unspecialised cells, from germ layers → tissue
- coelom
- mesoderm lines organs etc too → peritoneum
- diploblasts
- have only ectoderm and endoderm, no coloem
- triploblasts
- 3 germ layers (ecto, endo, mesoderm), may have a coelom
- schizocoely
- in protostomes, mesoderm just splits in the middle → coelom
- enterocoely
- in deuterostomes, mesoderm lines out-pockets of gut → coelom
2.2Nematodes¶
- nematodes
- roundworms, pseudocoelom, ecysozoan
- C. elegans
- model organism, species of nematode, used in research
- hookworm
- type of roundworm, spread through feces → intestine
2.3Annelids¶
- annelida
- segmented worms, lophotrocozoans
- segmentation
- evolutionary advance, multiple copies of structures, specialisation
- septa
- walls separating segments
- serial homology
- specialisation of similar, repetitive structures
- circular and longitudinal muscles
- contraction → compression → elongation → movement
- Polychaeta (class)
- many hairs, marine worms, trocophore larvae, must stay moist
- Clitellata (class)
- has clitellum, subclasses below
- Oligochaeta (subclass)
- few hairs, terrestrial, detritivores, aerate soil
- Hirudinea (subclass)
- leeches, no setae
- clitellum
- reproductive structure, secretes mucus → cocoon for embryo
3Lecture 12¶
3.1Mollusks¶
- aposematic
- warning coloration, to warn off predators (might indicate toxicity)
- Mollusca
- snails shellfish squid etc, bilateral triploblasts, trocophore larvae (if marine)
- mantle
- layer covering viscera, secretes CaCO3 shell
- mantle cavity
- gills OR lots of blood vessels for terrestrials ("lungs")
- radula
- located after mouth → tearing and scraping
- shell
- secreted by mantle, gastropods (nudibranchs) and cephalopods can lack
- Polyplacophora (class)
- many dorsal plates, ventral gills
- Bivalvia (class)
- shellfish, hinged shell, siphons, small head, large foot → digging
- adductor muscles
- clam use → clamp shell shut
- incurrent/excurrent
- water flows in/out (ref. to siphons usually)
- Gastropoda (class)
- snails etc, most diverse, 2 tentacle pairs, undergo torsion
- torsion
- visceral mass rotates 180° (due to different growth rates), separate evolutionary event from coiling
- operculum
- for snails, → seal off head; else, gill covering
- love dart
- snails, special mucus → improve fertilisation
- cerrata
- additional breathing apparatus; nudibranchs can use to store cnidarians' nematocysts
- Cephalopoda (class)
- squids etc, few tentacles (arms), reduced/no shell
- chromatophores
- pigmented cells on surface of cephalopods and others → colour change, from neural crest
- hemocoel
- organs bathed in blood
- mantle & siphon
- jet propulsion in cephalopods
3.2The nervous system¶
- ganglia
- concentration of nerve cells
- afferent/efferent
- going TO/going AWAY FROM
- neurons
- generate/transmit electrical signals (nerve impulses)
- glial cells
- support neurons (nutrients, insulate, maintain extracellular environment)
- Schwann cells
- type of glial cell, insulate axon
- axon
- branch part of neuron, synapse with neurons/receptors
- dendrites
- small twig-like part of neuron, interact with other neurons
- axon hillock
- the centre, integrates signals, initiates action potential
- nerve impulse
- action potential, quick voltage change across membrane
- temporal summation
- one neuron stimulated a lot
- node of Ranvier
- between myelin sections, nerve impulses jump this
- myelin
- outgrowth of glial cells, wrap around axons
4Lecture 13¶
4.1Arthropods part one¶
- Arthropoda
- jointed foot, crustaceans insects etc, most diverse
- reduced segmentation
- some fused, only head, abdomen, thorax (perhaps cephalothorax)
- trilobytes
- first arthropods, extinct, fossils
- antennae
- sensory, on head
- maxillipeds
- hold food, on head
- pereiopods
- walking, getting food
- pleopods
- swimming (abdomen)
- rigid exoskeleton
- chitin, proteins (CaCO3 - marines), molts
- skeletal muscles
- need resistor to act on; often antagonistically paired
4.2Muscles¶
- saltatory conduction
- in vertebrates, action potentials from one node of Ranvier to the next
- electrical synapse
- mechanical, shorter distance, no neurotransmitters, for reflexes and other quick, simple behaviours
- chemical synapse
- larger distance, neurotransmitters needed, more common in vertebrates
- neurotransmitter
- produced by neuron before synaptic cleft; traverse, bind to receptors
- sarcomere
- contractile unit of muscle cell
- actin filament
- thin, monomers + tropomyosin + troponin (proteins)
- myosin filament
- thick (proteins)
- contraction
- filaments slide past each other (no length change)
- fast-twitch fibers
- can reach max tension quickly but can't sustain, fatigue quickly
- slow-twitch fibers
- red muscles, cont. myoglobin, darker, for endurance
- myoglobin
- binds to O2 in muscles
- skeletal muscles
- striated, multinucleated, cylindrical
- cardiac muscle
- single nucleus (usually), striated, pacemaker cells
- smooth muscle
- NOT striated (actin & myosin irregularly arranged), involuntary
- pacemaker cells
- create action potentials independently → heartbeats
5Lecture 14¶
5.1Arthropods part two¶
- hormone
- chemical messenger substance in endocrine system, in blood
- Myriapoda (subphylum)
- countless feet, centipedes millipedes
- centipedes/millipedes
- 1 pair / 2 pairs of appendages per segment
- Chelicera (subphylum)
- fangs, incl. arachnids, no jaws
- pedipalps
- copulatory organs, pincers in scorpions (for chelicerates)
- Crustaceans (subphylum)
- shrimps Daphnia crabs barnacles etc, compose zooplankton
- plankton
- cannot outswim currents (zoo = heterotrophic, phyto = autotrophic)
- Hexapoda (subphylum)
- insects etc, 3 body parts
- book lungs/gills
- thin, like pages, in arachnids, internal/external
- spermatophores
- waterproof sperm packets, males pick up and transfer to female
- ephippia
- thick shell to protect eggs
- diapause
- delay in development due to environment
5.2Metamorphosis¶
- instar
- insect stage between molts
- complete metamorphosis
- huge change, e.g. caterpillar → butterfly
- incomplete/gradual metamorphosis
- no resting stage, e.g. nymph → adult
- paracrines
- act on neighbouring cells (quasi-hormones?), not in blood usually
- autocrines
- act on self
- PTTH
- neurohormone → prothoraric gland → produces ecdysone
- ecdysone
- secreted into the blood, targets epidermis → molting, stops production of PTTH
- juvenile hormone
- determines the instar stage; quantity decreases over time; cessation → pupation
- pupation
- → pupa, eventually adult; no juvenile hormone
- anti-diuretic hormone
- hypothalamus → pituitary → conserve water
- oxytocin
- contract uterus, release milk from mammary glands
- tropic hormones
- act on other endocrine glands
- insulin
- binds to receptors → increase blood glucose uptake
- diabetes I
- juvenile, not enough insulin produced → insulin shots
- diabetes II
- target cells unresponsive to insulin, associated with obesity, diet & exercise
- calcitonin
- hormone when calcium blood concentration too high; increases calcium uptake, osteoblasts
- PTH
- hormone when calcium blood concentration too low; retains calcium in kidney, osteoclasts, converts vitamin D → calcitriol
- osteoclasts/blasts
- breakdown/building of bone
- calcitriol
- hormonally active form of vitamin D → digestive system absorbs more calcium
6Lecture 15¶
6.1Echinoderms¶
- Echinodermata
- marine, benthic, pentaradial, secrete test
- water vascular system
- for gas exchange, moving feet etc
- madreporite
- pores to enter water vascular system, aboral
- ampoules
- off radial canals in arms
- podia
- tube feet, locomotion/feeding/respiration/sensory
- Crinoidea (class)
- sea lilies, feather stars
- Ophiuroidea (class)
- brittle/basket stars ... fractals
- Echinoidea (class)
- sea urchins, sand dollars, have pedicellariae
- Hoiothuroidea (class)
- sea cucumbers, extended body
- Asteroidea (class)
- starfish, predatory, mobile
- pedicellariae
- pincers, defense and cleaning
- extended body
- between radial and bilateral, respire through anus
- commensal
- one benefits, one unaffected
6.2Chordates¶
- chordates
- notochord, dorsal hollow nerve cord, post-anal tail
- notochord
- rigid, flexible, rod of cells, vacuoles filled with water, found in chordate embryos
- pharyngeal gill slits
- in ancestors and embryo (at least) for chordates
- neurulation
- embyronic formation of nervous system
- neural tube
- from thickening of ectoderm → brain in anterior end
- myomeres
- segmented muscles
- Cephalochordates (subphylum)
- lancelets, little fish-like things
- Urochordates
- tunicates, big sessile adult - basket, vertebrate sister group
7Lecture 16¶
7.1Features unique to chordates¶
- pouches
- embryonic gill slits (pharyngeal) in humans → middle ear
- post-anal tail
- resorbed in humans, vertebrates fuse → coccyx
- gill arches
- bars between gill slits, bone/cartilage
- gill rakers
- trap particles, prevent consumption
- arteries → arterioles
- away from heart → capillaries
- venules → veins
- back to heart
- ventricle & auricle
- two chambers of heart in fish
- sinous venous
- veins → heart
- bulbus conus arteriosis
- → arteries → body
7.2Fish¶
- axial skeleton
- skull, rib cage, vertebral column
- appendicular skeleton
- pectoral/pelvic girdles, fore/hind limbs (optional)
- Agnatha (superclass)
- jawless fish, lamprey/hagfish
- Placoderms
- early jawed fish, extinct
- Hagfish
- no vertebral column, retain notochord
- Lamprey
- complete braincase, cartilaginous vertebrae
- Chondrichthyes (class)
- cartilaginous fish
- sharks, skates, rays
- skates
- 2 lobes on pelvic fins
- rays
- 1 lobe on pelvic fins
- paired fins
- for propulsion, pelvic/pectoral
- lateral undulation
- alternate contraction of myomeres → swimming
- oviparous
- lay eggs
- ovoviviparous
- embryo in female, but there is yolk sac (resorbed)
- viviparous
- retain embryo, fed by placenta/secretions
- Osteichthyes (superclass)
- bony fish, including ray-finned fish
- swim bladder
- gas-regulated by gland → neutral buoyancy
- pheromones
- chemicals to signal to conspecifics (same species)
- Sarcopterygians (class)
- clade that contains coelacanths, lungfish, and all tetrapods
- Coelacanths
- skeleton of cartilage (bony fish ancestor)
- Lungfish
- swim bladder vascularised → breathes air (also has gills); tetrapod sister group
8Lecture 17¶
8.1The rise to land¶
- Ichthyostega
- early tetrapod, used nostrils to breathe air
- Eusthenopteron
- lobe-finned, first humerus, radius
- transitional forms
- rare in fossil record, few species
- Tiktaalik
- fishapod, transitional form
- 3-chambered heart
- mixing of blood (no septum in ventricle), present in amphibians
8.2The respiratory system¶
- ATP
- produced when glucose + O2 → CO2 + H2O + ATP
- tracheae
- have cartilaginous rings to prevent collapse, strength
- alveoli
- microscopic 1-cell thick air sacs, high surface area for gas exchange
- emphysema
- alveoli destroyed by inflammation (smoking)
- asthma
- smooth muscles constrict trachea, bronchi
- negative pressure breathing
- air goes in because cavity expands → pressure goes down
- positive pressure breathing
- amphibians; force air into lungs, open glottis
- glottis
- separates mouth and lungs in amphibians
- buccal cavity
- mouth (amphibians)
8.3Amphibians¶
- Amphibians
- first tetrapods, depend on water at some life stage, no scales
- neoteny
- no true metamorphosis (some amphibians)
- paedometamorphosis
- e.g. salamanders; larvae → sexual maturity
- obligate neoteny
- never morphs
- facultative neoteny
- waits until environmental conditions are right
- Salamanders (order)
- mostly internal fertilisation
- Frogs (order)
- includes toads; males = loud courtship calls
- Caecilians (order)
- lost appendages, look like worms lol
- R-strategy
- lots of kids, no care (not covered in course just interesting)
- K-strategy
- few kids, lots of Kare (^)
- Marsupial frog
- fertilised egg on female's back
- Darwin's frog
- vocal sac brooder
- Gastric brooding frog
- female swallows egg, no feeding or HCl production
- chytrid
- fungal infection, affects amphibians
9Lecture 18¶
9.1The amniotic egg¶
- birds
- evolved from dinosaurs so they are technically reptiles, but classically we separate the two
- non-avian reptiles
- truly terrestrial, develop/reproduce on land etc
- amniotic egg
- extra-embyronic membranes, may have shell
- therian
- eggs non-shelled, mammalian subclass
- albumen
- egg white, watery; protection, some nutrients
- chorion
- gas exchange structure, inside albumen, surrounds others
- amnion
- wraps around embryo, protects (membranous sac)
- allantois
- near embryo, gas exchange, stores water
- yolk sac
- near embryo, holds nutrients
- uric acid
- non-toxic N-based waste product, held in egg
9.2Excretion¶
- excretory system
- control volume/concentration/content of extracellular fluids
- osmoconformer
- extracellular fluids same concentration as environment
- osmoregulator
- extracellular fluids different concentration than environment
- ammonia
- NH3 polar, dissolves in water, toxic, often converted → uric acid/urea
- urea
- less toxic, less water needed for disposal
- protonephridia
- flame cells, tubules - excretory organ in flatworms
- flame cells
- cilia flickering like a '''flame'''
- metanephridia
- in many invertebrates, like kidneys
- nephrostome → nephridiopore
- disposal of waste, part of the above
- malpighian tubes
- filamentous, off midgut - insects
- kidneys
- 2 → one is redundant; filter blood → urine
- nephron
- functional unit of kidneys
- Glomerulus
- ball of capillaries
- Bowman's capsule
- tubule structures, water leaks here
- Loop of Henle
- strong concentration gradient → further concentrate urine
- kidney failure
- → salt/water retention → possible poisoning
- dialysis
- blood passes over membranes in solutions, filters out bad things etc
9.3Reptile diversity¶
- Testudines (order)
- turtles (including tortoises = land)
- dorsal shell
- on turtles; expansion of ribs
- Lepidosaurs (superorder)
- squamata, tuataras etc
- Squamata (order)
- lizards, snakes (lost limbs lol)
- Tuataras
- like lizards, but have a third eye
- Archosaurs (group)
- crocodilians, dinosaurs and modern birds
- Crocodilians (order)
- crocodiles, alligators, aimans, gharials
- Crocodile/alligator
- V-shaped/U-shaped snout (top jaws larger)
- Ornithischians
- beaked, herbivorous dinosaurs
- Sauropods
- long-neck dino
- Theropods
- T-rexes etc → birds
10Lecture 19¶
10.1Birds¶
- Aves (class)
- birds, highly evolved reptiles, bipedal, 3 hind toes
- Lesser snow geese
- population explosion → overforaging of arctic tundra
- Archaeopteryx
- "ancient wings", transitional form, first bird, Jurassic
- Galapagos finches
- beaks → niches, adapted to diet
- endotherms
- generate heat through inefficiency in energy transformation (metabolic processes)
- ectotherms
- absorb external heat
- heterotherms
- characteristics of both, e.g. bears (hiberation), flying insects
- insect muscles
- must be 34° to fly, so they shiver
- counter-current heat exchangers
- in pelagic fish, blood → muscles to warm them
- hypothalamus
- negative feedback → thermoregulation
- parabronchi
- branch off bronchi → air sacs
- tidal respiration
- e.g. mammals, not unidirectional; like a tide
- feathers
- insulation, flight, sensory, line nests; keratin (derived from scales)
- convergent evolution
- common environment/need, not ancestor (not homologous)
- spoiler
- maintain laminar flow over wing
- alula
- feathers on first digit → control
- hovering
- hummingbirds, rotate shoulder joint 180°
- dynamic
- oceanic birds, dive into wind, go up
- static soaring
- jump off cliffs, soar on updrafts (e.g. turkey vultures)
- soaring
- lift without flapping - updrafts, thermals
- ground-up theory
- bipedal runner, one day decided to fly (supported by partridge chicks)
- tree-down theory
- arboreal ancestor → gliding between trees; supported by fossil with feathers on legs
11Lecture 20¶
11.1Mammals¶
- Mammalia (class)
- hair, sweat/mammary glands, 4-chambered heart, 225 mya
- skull morphology
- number, placement of temporal fenestrae (holes) → muscle attachment
- anapsid
- only eyehole (turtles)
- synapsid
- including therapsids, mammals; one extra hole, bottom
- euryapsid
- extinct marine reptiles; one extra hole, top
- diapsid
- 2 holes, birds and dinosaurs
- therapsid
- early synapsid, mammalian ancestor, legs beneath body
- heterodonty
- teeth specialised for different functions
- middle ear
- 3 bones, hammer stirrup anvil, derived from jaw
- Ambulocetus
- whale ancestor (cetaceans)
- Smilodon
- sabre-toothed cat, hunted to extinction probably
- Megatherium
- giant ground sloth, also hunted?
11.2Reproduction¶
- reciprocal hermaphroditism
- each fertilises the other
- sequential hermaphroditism
- change change gender, common in fish
- hermaphroditic mammals
- e.g. beluga in St. Laurence (both gametes), possibly due to pollutants
- pseudohermaphrodite
- e.g. spotted hyena, female has enlarged clitoris → pseudopenis
- sexual dimorphism
- sexes look different ...
- rodents
- incisors constantly growing; largest group of mammals
- Prototherians
- mammalian group; includes platypi; shelled eggs
- Monotremes (order)
- only extant order of Prototherians; platypi, basically
- Marsupials
- some placental, kangaroos etc; viviparous
- Eutherians
- placental, viviparous, no pouch/shell; with Marsupials = therians
- placenta
- extra-embryonic membranes + uterus lining (endometrium), nutrients, maintained by hormones
- oviduct
- where fertilisation occurs
- zona pellucida
- glycoprotein membrane, ensures same-species fertilisation
- cumulus
- surrounds the above, like a cloud ☁ ☁ ☁
- acrosomal reaction
- head of sperm (acrosome) has enzymes to digest zona
- trophoblast
- outer layer of blastocyst → part of placenta
- chorion
- secretes hormones, has villi to attach to uterus
- allantois
- becomes blood vessels, umbilical arteries
- umbilical cord
- 2 arteries, deoxygenated blood → mother; 1 vein, oxygenated blood → fetus
- water breaking
- fetus emerging from amniotic sac
- hCG
- Human chorionic gonadotropin, hormone, presence of it in urine measured by pregnancy tests
12Lecture 21¶
12.1Primates¶
- Prosimians
- in order "primates", arboreal, lemurs etc, large eyes (noctural)
- Anthropoids
- other primates; tarsiers, monkeys, apes
- Tarsiers
- tiny primates, completely carnivorous (insects); large tarsus bones (feet)
- New World monkeys
- Americas, have prehensile tail (grasping)
- Old World monkeys
- Asia, Africa; no prehensile tail
- ape
- larger brain/body ratio than monkeys, lack tails (so do some monkeys)
- gibbons
- lesser apes, smaller, arboreal
- Orangutans
- larger, walk and climb up trees
- African apes
- gorillas, chimps, hominids
- Homo neanderthalis
- coexisted with humans, extinct 30,000 ya
- Hominids
- arose from ardipithicine ancestors (protohominid)
- Lucy
- australopithecus afarensis, extinct, bipedal, small brain; a relatively complete skeleton
- Homo habilis
- first evidence of tool use, shorter jaw ... extinct
- Homo erectus
- first to leave Africa, use fire ... also extinct
- Homo sapiens
- 200,000 ya, larger brains ... STILL EXTANT you might have met one
- Homo floriensis
- hobbit, extinct due to volcanic eruption?
12.2The mammalian nervous system¶
- central nervous system
- brain + spinal cord (continuous)
- peripheral nervous system
- lateral nerves + spinal nerves from spinal cord
- forebrain
- from telecephalon + diencephalon
- telencephalon
- cerebrum, limbic system
- diencephalon
- hypothalamus, thalamus
- cerebrum
- center of intellect etc, 2 hemispheres separated by corpus callosum
- cerebral cortex
- top layer, rich in cell bodies
- limbic system
- amygdala, hippocampus, nucleus accuben; basic drives
- nucleus accubens
- site of dopamine release
- amygdala
- controls fear; without, you're fearless
- hypothalamus
- continuous with pituitary, produce neurohormones, released by pituitary
- thalamus
- relay station between cerebral cortex, others
- midbrain
- relay, cerebrum → brainstem
- brainstem
- pons, midbrain (huh?), medulla oblongata
- hindbrain
- pons, medulla, cerebellum
- pons
- breathing along with medulla, messages → cerebrum from nerve cords
- medulla oblongata
- autonomic functions
- cerebellum
- smaller than cerebrum, outgrowth of pons; coordination etc
- spinal cord
- reflexes, protected by vertebrae, meninges
- meninges
- membranes; cushioning, blood supply
- reflex
- involuntary neuromuscular action, controlled by spine; after, message → brain informing it
- sympathetic
- stress, fight or flight (norepinephrine)
- parasympathetic
- rest & digest (acetycholine)
13Lecture 22¶
13.1Ecosystem ecology¶
- ecosystem
- chemical/physical properties + organisms
- Anthropocene
- current geological era ("after" Holocene)
- biome
- environment of similar climate, vegetation
- eutrophication
- too many nutrients → algal bloom → algae die, aerobic bacteria to decompose → O2 down
- paleoliminology
- study of lake sediments
- chronosequence
- looking at different sediments with different ages?
14Lecture 23¶
14.1Introduction to evolution¶
- evolution
- changes in inherited traits of a population over generations
- mutation
- imperfect replication of gene sequence
- genetic drift
- random change in allele frequency → fixation of one allele
- natural selection
- best traits for surviving → next generation
- artificial selection
- choosing a trait, e.g. breeding, crops
- sexual selection
- intrasexual (male competition) or intersexual (female choice)
- gonopodin
- male mosquitofish, aids sneaky copulation; but a hindrance, natural selection wise
15Lecture 24¶
15.1Speciation¶
- gene flow
- movement of genes across populations, opposes divergence, through migration/interbreeding
- neutral allele
- no effect on fitness/phenotype, usually only lost due to genetic drift
- morphological
- definition of a species, based on appearance
- cryptic species
- a bunch of species that all look the same, e.g. in frogs
- biological
- definition of a species, due to reproductive isolation
- reproductive isolation
- can only breed → fertile offspring with each other
- phylogenetic species
- branch on tree of life
- ring species
- Siberian greenish warbler, around mountain; reproductive isolation at ends
- allopatric/sympatric
- different/same area ("country")
- speciation
- one species, 2+ groups diverge; gene flow must be interrupted
- ecological speciation
- adaptation to different niches → divergence
- polyploidy
- offspring has different number of chromosomes
- cytoplasmic incompatibility
- Wolbachia bacteria, infects beetles, inf. males only reproduce with inf. females
16Lecture 25¶
16.1Ecology¶
- ecology
- study of interactions between organisms, environment
- foraging theory
- animals eat to maximise $\frac{\mbox{energy intake}}{\mbox{work done}}$
- geophagia
- eating dirt, protects against toxins (binds to them)
- group selection
- group with lots of altruism → more reproductively successful
- allee effects
- at low population numbers, hard to find mate; growth rate low
- trophic cascades
- cascading effects in food chain. see: Yellowstone disaster